P.A.R.I.S
Pocket Alignment in Relation to Identification of Substrates
Perl script used to extract ligand binding pockets. To use it, you have to add your own path for VMD application in the $vmd variable.
A new protein binding pocket similarity measure based on comparison of 3D atom clouds: application to ligand prediction
B. Hoffmann *, M. Zaslavskiy *, J.P. Vert and V. Stoven
Mines ParisTech (CBIO,CMM), INSERM U900, Institut Curie, 35 rue Saint Honore, Fontainebleau
F-77300, France. *co-first authors
Downloads :
The archive contains source code of the method described in the article
To use Pocket_extractor, you need to get VMD.
Links :
Centre for Computational Biology : click here
Mines ParisTech : click here
ArXiv : click here
